PoplarV1, Main, Exploration, bibRecord, 000465

Draft Genome Sequence of Tumebacillus sp. Strain BK434, Isolated from the Roots of Eastern Cottonwood.

Identifieur interne : 000465 ( Main/Exploration ); précédent : 000464; suivant : 000466

Draft Genome Sequence of Tumebacillus sp. Strain BK434, Isolated from the Roots of Eastern Cottonwood.

Auteurs : Dana L. Carper [États-Unis] ; Christopher W. Schadt [États-Unis] ; Leah H. Burdick [États-Unis] ; Udaya C. Kalluri [Pays-Bas] ; Dale A. Pelletier [Pays-Bas]

Source :

Microbiology resource announcements [ 2576-098X ] ; 2020.

RBID : pubmed:32467272

Abstract

A Gram-positive bacterium was isolated from the root of an eastern cottonwood tree (Populus deltoides) in Georgia and identified as a Tumebacillus species with 99% 16S rRNA nucleotide identity to Tumebacillus avium The genome is 4.6 Mbp and encodes 4,072 proteins and 251 RNAs.

DOI: 10.1128/MRA.00351-20
PubMed: 32467272
PubMed Central: PMC7256259

Affiliations:

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Le document en format XML

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<front><div type="abstract" xml:lang="en">A Gram-positive bacterium was isolated from the root of an eastern cottonwood tree (<i>Populus deltoides</i>
) in Georgia and identified as a <i>Tumebacillus</i>
 species with 99% 16S rRNA nucleotide identity to <i>Tumebacillus avium</i>
 The genome is 4.6 Mbp and encodes 4,072 proteins and 251 RNAs.</div>
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 species with 99% 16S rRNA nucleotide identity to <i>Tumebacillus avium</i>
 The genome is 4.6 Mbp and encodes 4,072 proteins and 251 RNAs.</AbstractText>
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<ReferenceList><Reference><Citation>Mol Plant Microbe Interact. 2012 Jun;25(6):765-78</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22375709</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Announc. 2014 Nov 13;2(6):</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25395648</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Pharmacogenomics. 2004 Jun;5(4):433-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15165179</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Int J Syst Evol Microbiol. 2008 Jun;58(Pt 6):1497-501</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18523202</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Int J Syst Evol Microbiol. 2018 May;68(5):1659-1664</Citation>
<ArticleIdList><ArticleId IdType="pubmed">29561257</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2016 Aug 30;82(18):5698-708</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27422831</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Stand Genomic Sci. 2015 Oct 26;10:86</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26512311</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Comput Biol. 2012 May;19(5):455-77</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22506599</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2011 Sep;77(17):5934-44</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21764952</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Int J Syst Evol Microbiol. 2015 Jul;65(7):2194-2198</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25858243</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Int J Syst Evol Microbiol. 2015 Dec;65(12):4363-4368</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26956705</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 1985 Jan;49(1):1-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">3883894</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Int J Syst Evol Microbiol. 2016 Jun;66(6):2192-2197</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26956136</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Mol Biol. 1990 Oct 5;215(3):403-10</Citation>
<ArticleIdList><ArticleId IdType="pubmed">2231712</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Int J Syst Evol Microbiol. 2015 Nov;65(11):4107-4112</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26303322</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
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Draft Genome Sequence of Tumebacillus sp. Strain BK434, Isolated from the Roots of Eastern Cottonwood.

Draft Genome Sequence of Tumebacillus sp. Strain BK434, Isolated from the Roots of Eastern Cottonwood.

Source :

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki